Biobb IO changelog
What’s new in version 5.0.1?
Changes
FIX: Remove Drugbank block because programatical access has been prohibited.
What’s new in version 5.0.0?
Changes
CI/CD: Update biobb_common version.
CI/CD: Update set-up micromamba.
CI/CD: Update GA test workflow to Python >3.9
DOCS: Updating to Python 3.9
CI/CD: Update .gitignore to include the new file extensions to ignore
CI/CD Fixing tests to avoid DB dependency
CI/CD: Change test conf.yml to adapt to new settings configuration
[FEATURE] New sandbox_path property
What’s new in version 4.2.0?
In version 4.2.0 the dependency biobb_common has been updated to 4.2.0 version.
New features
Update to biobb_common 4.2.0 (general)
What’s new in version 4.1.1?
In version 4.1.1 some end points have been fixed.
New features
Updated endpoints for downloading ligands for ligand and ideal sdf
What’s new in version 4.1.0?
In version 4.1.0 the dependency biobb_common has been updated to 4.1.0 version.
New features
Update to biobb_common 4.1.0 (general)
What’s new in version 4.0.0?
In version 4.0.0 the dependency biobb_common has been updated to 4.0.0 version.
New features
Update to biobb_common 4.0.0 (general)
What’s new in version 3.9.0?
In version 3.9.0 the dependency biobb_common has been updated to 3.9.0 version.
New features
Update to biobb_common 3.9.0 (general)
All inputs/outputs are checked for correct file format, extension and type (general)
What’s new in version 3.8.0?
In version 3.8.0 the dependency biobb_common has been updated to 3.8.1 version.
New features
Update to biobb_common 3.8.1 (general)
What’s new in version 3.7.0?
In version 3.7.0 the dependency biobb_common has been updated to 3.7.0 version.
New features
Update to biobb_common 3.7.0 (general)
What’s new in version 3.6.0?
In version 3.6.0 the dependency biobb_common has been updated to 3.6.0 version.
New features
Update to biobb_common 3.6.0 (general)
What’s new in version 3.5.2?
In version 3.5.2 there have been small changes.
New features
Modified BindingSite tool name to ApiBindingSite for the sake of avoiding possible conflicts with other tools.
Modified some broken links of the PDBe REST API.
What’s new in version 3.5.1?
In version 3.5.1 there have been added the new tools for binding sites, canonical FASTA, download structure in mmcif format, download ideal sdf for ligands and download structure info in JSON format.
New features
New BindingSite tool for searching binding sites through the PDBe REST API
New CanonicalFasta for downloading the canonical FASTA of a structure from the Protein Data Bank
New Mmcif tool for downloading a structure in MMCIF format
New IdealSdf tool for downloading a ligand in SDF format
New StructureInfo tool for getting all the available info of a structure in JSON format
What’s new in version 3.5.0?
In version 3.5.0 the dependency biobb_common has been updated to 3.5.1 version. Also, there have been added the new tools for MemProtMD DB REST API. There have been also implemented the new version of docstrings, therefore the JSON Schemas have been modified.
New features
Update to biobb_common 3.5.1 (general)
New MemProtMD DB REST API tools
New extended and improved JSON schemas (Galaxy and CWL-compliant) (general)
Other changes
New docstrings
What’s new in version 3.0.1?
In version 3.0.1 the dependency biobb_common has been updated to 3.0.1 version. New tool for downloading components from the Drugbank.
New features
Update to biobb_common 3.0.1
New Drugbank tool
Other changes
Bug fixes in MmbPdbClusterZip
Bug fixes in MmbPdbVariants
What’s new in version 3.0.0?
In version 3.0.0 Python has been updated to version 3.7. Big changes in the documentation style and content. Finally a new conda installation recipe has been introduced.
New features
Update to Python 3.7 (general)
New conda installer (installation)
Adding type hinting for easier usage (API)
Deprecating os.path in favour of pathlib.path (modules)
New command line documentation (documentation)
Other changes
New documentation styles (documentation)